XbiomeAnalysis / MGS_DataAnalysis_template

MGS sequencing data analysis workflow template

Metagenomic Microbiota Data Analysis based on XMAS2 package

📖 Procedures

The standard data analysis of 16S and MGS data by XMAS 2.0. The upstream process is performed by in-house pipeline. and this example just shows how to perform downstream data analysis. In briefly, the example comprises the following steps:

1. Converting inputs into phyloseq object;

2. Quality Evaluation;

3. Pre-Processing Data;

4. Diversity analysis;

5. Ordination analysis;

6. Composition analysis;

7. Differential analysis;

8. Network analysis.

Functions of XMAS 2.0

✍️ Authors

1. Hua Zou

Xbiome company

🔧 Change log

• Submitted to gitlab. (2022-05-28)
• Uploaded bookdwon. (2022-08-04)
• Added Chapter Network Analysis . (2022-08-04)
• Updated bookdwon by XMAS version 2.2.0. (2023-10-27)