XSLiuLab's repositories
tumor-immunogenicity-score
TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
XSLab-docs
上科大刘雪松课题组基因组学分析传承与分享知识库
PC_CNA_signature
Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/
Immunoediting
Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution
ecDNA_immune
Extrachromosomal DNA is associated with decreased immune cell infiltration and antigen presentation, represents a potential cancer immune evasion mechanism
Noncoding-code-2020
CDC20 noncoding project
XSLiuLab.github.io
课题组网站
neoantigen_depletion
neoantigen depletion checking and detection
Pan-cancer_CNA_signature
https://xsliulab.github.io/Pan-cancer_CNA_signature/
hypoxia_target
Deep learning reveals the metabolic vulnerability of hypoxic tumor cells and the critical function of FLAD1 mediated tumor hypoxia adaption
InterpretationAnalysisHRDCNA
An interpretation analysis of copy number alteration features in pan-cancer homologous recombination deficiency prediction and biology
FoLST2021-PancancerCNAsig-Poster
A poster showing Pancancer CNA signature project at FoLST2021, ShanghaiTech University.https://xsliulab.github.io/FoLST2021-PancancerCNAsig-Poster/
CancerBiology
Support materials for 《Cancer Biology》,Shanghaitech University
single-cell-CNA-signature
This repository provides the analysis reports, code and data for readers who are insterest in this project and make it easier to reproduce the whole analysis procedure.