WortJohn's repositories
scrapy_project
The python version is 2.7 . This repository mainly includes scrapy projects that i have done.
alphafold
Open source code for AlphaFold.
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bioinformatic_kit
The python version is 2.7. This repository includes some script programs by myself.
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
ChatGPT
🔮 ChatGPT Desktop Application (Mac, Windows and Linux)
CVPR2024-Papers-with-Code
CVPR 2024 论文和开源项目合集
d2l-zh
《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。
deepcpg
Deep neural networks for predicting CpG methylation
django-blog-tutorial-templates
一套简洁但优雅的 HTML 博客模板
facets
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
htslib
C library for high-throughput sequencing data formats
hmmcopy_utils
Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.
learn_django
This repository is used for learning the web frame "Django"
Machine-Learning-Projects
This Contain Some Machine Learning Projects that I have done while understanding ML Concepts.
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
OpenMS
The codebase of the OpenMS project
opensource.guide
Community guides for open source creators
pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
python-Levenshtein
The Levenshtein Python C extension module contains functions for fast computation of Levenshtein distance and string similarity
tcr-dist
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
vt
A tool set for short variant discovery in genetic sequence data.