Wei-Xin Liu's repositories
TCGADownload
Library for downoading TCGA data
biocode
Bioinformatics code libraries and scripts
hello-world
My first repository
Data-Analysis
Data Analysis Using Python
distribution-is-all-you-need
The basic distribution probability Tutorial for Deep Learning Researchers
EmbryoTimecourse2018
Data and analysis scripts for our Embryo Timecourse paper.
gatk
Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
genomics
Scripts, utilities and programs for genomic bioinformatics.
GFFUtils
Python module and utility programs for working with GFF files
gitignore
A collection of useful .gitignore templates
hic-bench
A set of pipelines for Hi-C and ChIP-Seq analysis.
HTS
whole genome sequencing analysis pipeline
hub
hub helps you win at git.
metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
presentations
Just a place to store and link to presentations I have done
shadowsocks
个人项目存档，不接受任何反馈和 PR.....
shadowsocks_install
VPS推荐网站
SiC-seq
Scripts used in the 2017 SiC-seq paper
ssGSEA2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
vimrc
The ultimate Vim configuration: vimrc
YeastStrainsStudy
Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.