Ссылка на презентацию: https://docs.google.com/presentation/d/1KfEcatNRX7WQDEpcnT8A6y3Tcj3nlGIiHynu5gXnj9o/edit?usp=sharing
H7: https://github.com/WhiteTeaDragon/hse21_H3K36me3_G4_human
HCT116: https://github.com/yaolgaloktionova/hse21_H3K36me3_G4_human
MCF-7: https://github.com/PolinaKananykina/hse21_H3K36me3_G4_human
GM12878: https://github.com/amamedov/hse21_H3K36me3_G4_human
HepG2: https://github.com/Sophie178/hse21_H3K36me3_G4_human
HEK293: https://github.com/NickaKos11/hse21_H3K36me3_G4_human
Ссылка на сессию в геномном браузере: https://genome.ucsc.edu/s/nicka1106/hse21_H3K36me3_G4_group
Код для получения пересечения файлов:
cd interseсt_bed_files
ls > ../../../filenames.txt
cat ../../../filenames.txt | xargs -tI{} sort -k1,1 -k2,2n -o sorted.{} {}
bedtools intersect -a sorted.H3K36me3_GM12878.intersect_with_Homo_Li_KPDS.bed -b sorted.H3K36me3_H7_intersect.bed > total_intersection.bed
bedtools intersect -a total_intersection.bed -b sorted.H3K36me3_HCT116.intersect_with_G4.bed > total_intersection2.bed
bedtools intersect -a total_intersection2.bed -b sorted.H3K36me3_HEK293_with_G4.intersect.bed > total_intersection3.bed
bedtools intersect -a total_intersection3.bed -b sorted.H3K36me3_HepG2.intersect_with_Homo_Li_KPDS.bed > total_intersection4.bed
bedtools intersect -a total_intersection4.bed -b sorted.H3K36me3_MCF-7.intersect_with_G4_seq_Li_K.bed > total_intersection5.bed
cp total_intersection5.bed ../final_intersection.bed