WenjianBI

SPACox

GWAS for survival analysis in large cohorts

POLMM

Proportional Odds Logistic Mixed Model (POLMM) for ordinal categorical data analysis

SPAGE

SaddlePoint Approximation implementation of GxE analysis

STEPS

Functions to conduct genetic association analyses of secondary traits in extreme phenotype sequencing

Bioinformatics

coxphf

:exclamation: This is a read-only mirror of the CRAN R package repository. coxphf — Cox Regression with Firth's Penalized Likelihood. Homepage: http://cemsiis.meduniwien.ac.at/kb/wf/software/statistische-software/fccoxphf/

EmpSPA

Empirical SaddlePoint Approximation implementation of GWAS for binary, time-to-event, or other traits

grab.github.io

math-as-code

a cheat-sheet for mathematical notation in code form

pheweb

A tool to build multi-phenotype GWAS browsers

pheweb-rg-pipeline

Genetic correlation calculation pipeline via summary statistics for PheWeb

R_packages

Rcpp

Summarize something about Rcpp

RvED

Incorporating Effect Directions Boosts Statistical Power of Region-Based Association Tests

SAIGE

SAIGE-1

Development for SAIGE and SAIGE-GENE(+)

seqminer

Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R

SKAT

:exclamation: This is a read-only mirror of the CRAN R package repository. SKAT — SNP-Set (Sequence) Kernel Association Test

SKAT-1

Sequence kernel association test (SKAT)

STEPS-simu

Examples to illustrate how to apply STEPS package

survival

Survival package for R

useful_code_for_genetic_analysis

Simple unix commands and more