WeiSong-bio's repositories
roryk-awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq
roryk-bcbioSinglecell
R package for bcbio single-cell RNA-seq analysis.
roryk-In-depth-NGS-Data-Analysis-Course
In-depth NGS Data Analysis Course containing all course materials for the Fall 2018 version of HBC's In-depth NGS Data Analysis Course, a 12-day course run over 6 weeks.
1-Unstar2-Fork-3-iracooke-transcriptomics-workflow
Instructions to take raw transcriptomics reads and progress to a counts file that can be used in R packages for statistical analysis of differential expression.
atmartens-ribosome_profiling
This is a summary of how to use the code to perform the data analysis on the Linux (BASH) command line.
Bioinformatics-Resources
A curated list of resources for learning bioinformatics.
boboppie-ngs-in-bioc
A 3-day course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
boboppie-RibORF
RibORF: Identify translated ORFs using ribosome profiling
extract-transcript-regions
For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and CDS).
LUMC-ribosome-profiling-analysis-framework
Ribosome Profiling analysis framework
parisepigenetics-riboproanalysis
RiboProPipe is a pipeline for Ribosome Profiling analysis of any eukaryotic genome