Ward D's repositories
Advanced_analytics_KUL
Repository for KUL course advanced analytics in Business
CRUP
CRUP collapses different layers of epigenetic information into a single list of regulatory units consisting of dynamically changing enhancers and target genes.
customcontamination
a list of custom contaminants.
gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
github-actions
Play around with github actions
HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
htseq-clip
a toolset designed for the processing and analysis of eCLIP/iCLIP dataset
LCD-show
2.4" 2.8"3.2" 3.5" 5.0" 7.0" TFT LCD driver for the Raspberry PI 3B+/A/A+/B/B+/PI2/ PI3/ZERO/ZERO W
pudding
An attempt at a project template
slurmgoggles
Monitor your high performance infrastructure configured over slurm using TIG stack
py2bit
A python library for accessing 2bit files
pyBigWig
A python extension for quick access to bigWig and bigBed files
pycoQC
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
snakemake-executor-plugin-slurm
A Snakemake executor plugin for submitting jobs to a SLURM cluster
Supptables_thesis
Supplementary tables that won't fit in the thesis. doc.
UMI4Cats
An R package for analyzing UMI-4C chromatin contact data.