MICC Cell Observatory at Weizmann Institute of Science's repositories
FiberThickness
Measure thickness of horizontal fiber
PME_Kinetics
Evaluating paternal mitochondrial elimination kinetics in Drosophila embryos
OsteoclastsWorkflow-Tutorial
Incorporating Machine learning tools into Image Analysis workflows using Fiji, Ilastik and StarDist
Atg8a-and-Axoneme-analysis
We use Arivis pipeline to analyze the distance between Atg8a and the Axon
Neurons-Macrophages-colocalization-in-lung
Calculate the distance between neurons and different macrophage cells in the lung
Silk-threads-analysis
Semi-automated image analysis of the sizes of silk nano-fibrils and nano-bundles was performed using a Fiji and Ilastiknd la
GC-Analysis
Identify distinct regions within the Germinal center (GC) using follicular dendritic cell (FDC) markers CD23 and CD35.
Bacteria-granule-colocalization-quantefication
Quantefication of colocalized bacteria and granule
Granules-In-Bacteria
Size and distribution estimation of granules in bacteria
Crypts_SpatialOrganization
Segment colon crypts from z-projection of SHG images of fibrillar collagen and Quantify fibrosis by analyzing the spatial organization of the crypts.
LaurdanInLiveCellImaging
Macro for paper : Laurdan in live cell imaging
Myelin_Profiles_PNS
Segmentation and quantification of mature isolated myelin rings from serialEM of PNS
Intestinal_Barrier_Function
Morphological analysis of Intestinal Barrier Function based on images of Epithelial Tight Junction (TJ)