This whole dir is eclipse pydev project.
Layout:
src/
sources, apparently
and some packages
General idea is that every python script that is supposed to be run with
command line arguments should be in 'src' folder (so that it won't cause
problems with PYTHONPATH when run from command line). Scripts that are
run withoud command like arguments and thus can be conveniently run from
eclipse, are allowed in package folders as well (because eclipse adds src
to python path).
data/
endo.dna -- ignored (dl from http://save-endo.cs.uu.nl/endo.zip)
<prefix>.dna
<prefix>.rna -- ignored (produce by execute.py)
<prefix>.png -- ignored (produce by build.py)
scripts/
obviously
Also, use helpers.project_dir to relate to file system.