This package is intended to be used by Polly users - bioinformaticians, data scientists, and life science researchers - working in drug discovery and development.
Polly-python can be installed by running:
pip install polly-python- Discover biomedical datasets specific to their research requirements by querying omixatlas which have a well-defined schema and curated metadata fields.
- Expanding the query by using ontological mappings for diseases.
- Download the datasets of interest and use them for further enrichment and analysis using other open-source bash, R and Python packages commonly used in life-science research.
- Seamlessly interact with the Schema of the OmixAtlas by using fetch, update, and post functions.
- Create new Workspaces and fetch the list of existing ones.
- Upload and Download files and folders from Workspace.
- Save dataset of interest from OmixAtlas to Workspace.
- Examples of characteristics and functions of polly-python can be found as Jupyter Notebook here.
- Full documentation available here.
- Refer to the
CONTRIBUTING.mdfile for detailed information
If you have questions, suggestions or problems, feel free to open an issue here.
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