VirtualPlants

timagetk

3D and 2D Image processing algorithms in Python for tissues

draco_stem

OpenAlea library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images : Dual Reconstruction by Adjacency Complex Optimization (DRACO) and SAM Tissue Enhanced Mesh (STEM)

tissue_analysis

An OpenAlea library providing image analysis tools to extract quantitative information from 3D segmented tissue images

openalea

Temporary repository used to merge openalea/core openalea/oalab openalea/vplt. Once merged, move it to openalea/openalea

cellcomplex

OpenAlea library implementing data structures and algorithms for the representation and manipulation of cellular complexes.

tissuelab

A multi-platform, plugin-based platform dedicated to the interactive visualization and complex processing of plant tissues

AML

AML: The AMAPmod language for plant architecture analysis

lpy

An open source python version of the Lindenmayer Systems.

openalea-components

Openalea components

segmentation_evaluation

mtg

The Mutliscale Tree Graph datastructure

tissuelab-conda-recipes

VirtualPlants-website

Sphinx sources for VirtualPlants website

VirtualPlants.github.io

VirtualPlants Website

cgal_meshing

Generate coarse meshes of cell tissue from 3D segmented images using the CGAL library.

dag

Formalisation of DAG usage for plant modelling

flowerdemo

Demo to manipulate flowers architecture and genes.

Lpy-Unity

openalea-recipes

Conda recipes for OpenAlea

plantlab

OpenAleaLab extension "plant"

RSML-conversion-tools

Conversion tools for RSML