VirtualEmbryo

Turlier lab's repositories

Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues

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Python package to reconstruct a multimaterial nonmanifold surface mesh from 3D segmentation masks of tissues or nuclei

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Python package to infer tensions from 2D microscopy images of embryos and tissues

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FEniCS Python code for the manuscript 'A viscous active shell theory of the cell cortex' by H. Borja da Rocha et al.

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Python package to reconstruct a multimaterial nonmanifold polyline mesh from 2D segmentation masks of tissues or nuclei

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2D lumen network

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Jupyter notebooks used for the review "Blastocoel morphogenesis: a biophysics perspective" by M. Le-Verge-Serandour and H. Turlier

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Small utility to extract the bundling score from actomyosin network images

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Supplementary code of the manuscript "Actin cortex drives membrane tension propagation in cells"

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