Pipeline to compute connectomes from UKB DWI using anatomically constrained tractography
For details on the pipeline, you can check this one that has very close steps: DWEZ.
python/3.9
FSL
MRtrix3/3.0.2
qsubshcom: is a command that permits launching scripts on differents types of High Performance Distributed Computing (HPDC) environments. clone it in ./UKB-dwi-2-connectome/ from https://github.com/zhilizheng/qsubshcom