VafaeeLab

dRNASb

bloodbased-pancancer-diagnosis

Benchmarking study of feature extraction methods for cancer diagnosis using blood-based biomarkers. Feature extraction methods are compared both in terms of their performance and robustness

Dermatology-ML

Following repository demonstrates machine learning architectures that can correctly classify lesions between LM and AMH. Overall, our methods showcase the potential for computer-aided diagnosis in dermatology, which, in conjunction with remote acquisition can expand the range of diagnostic tools in the community. This code is implemented using Keras and Tensorflow frameworks.

glioblastoma_exosomal_miR_markers

HybridModel-COVID-19-Prediction

To accurately predict the regional spread of COVID-19 infection, this study proposes a novel hybrid model which combines a Long short-term memory (LSTM) artificial recurrent neural network with dynamic behavioral models. Several factors and control strategies affect the virus spread, and the uncertainty arisen from confounding variables underlying the spread of the COVID-19 infection is substantial. The proposed model considers the effect of multiple factors to enhance the accuracy in predicting the number of cases and deaths across the top ten most-affected countries and Australia. The results show that the proposed model closely replicates test data. It not only provides accurate predictions but also estimates the daily behavior of the system under uncertainty. The hybrid model outperforms the LSTM model accounting for data limitation. The parameters of the hybrid models were optimized using a genetic algorithm for each country to improve the prediction power while considering regional properties. Since the proposed model can accurately predict COVID-19 spread under consideration of containment policies, is capable of being used for policy assessment, planning and decision-making.

multiobj_miR_marker_discovery

Multi-objective, network-based microRNA biomarker discovery of complex disease phenotypes

psdMAT

We present a novel pre-processing method (scPSD) inspired by power spectral density analysis to extract important information from large-scale single-cell omics data and enhance the separation of cellular phenotypes.

psdR

Power Spectral Density (psd) preprocessing method in R

adjustedPSD

bnsl_ga

Machine learning research project: Bayesian Network Structure Learning using Genetic Algorithms.

CM-MV-Lipidomics

CM_Lipidomics

COVID19-TS-Forcast

COVID-19 Time-Series Forcasting

COVID_CDR

COVIDSpread

drugSimDB

Drug Similarity information

FeatureSelection_Classification

Benchmarking on Feature selection and classification methods for blood-based biomarker discovery

find_website_network

shiny app for FIND network visualization

Fotomics-Imagification

HCC-Recurrence

microRNA_marker_discovery

A data-driven, knowledge-based approach to biomarker discovery

PanCancer-lncRNAs

PCa_proteomics_analysis

psdPy

scMulti-omics-data

Survival-HCC-Recurrence

Survival analysis study for predicting HCC recurrence one year after surgical resection

SVR2019-DL-Models

Repository for the deep learning models I used in my 2019 summer vacation research at UNSW