Vadim (Dani) Dubinsky's starred repositories
Deep-Learning-to-predict-resistance-to-Fluoroquinolone-antibiotics
In this interactive tutorial we will preform machine-learning (deep learning) analysis of bacterial DNA gyrase/topoisomerase in order to predict resistance to Fluoroquinolones antibiotics. We will used Convolutional Neural Network (CNN) based classifier to achieve it.
copepod_microbiome
Feeding strategy and dietary preference shape the microbiome of epipelagic copepods in a warm nutrient-impoverished ecosystem
DeepVirFinder
Identifying viruses from metagenomic data by deep learning
phylophlan
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
deep-learning-genomics-primer
Contains files for the deep learning in genomics primer.