Beast code in Giters

V-Catherine's repositories

Nextflow pipeline for ABRA (Assembly Based ReAligner)

Language:NextflowGPL-3.0000

Nextflow script for base quality score recalibration of bam files using GATK

Language:NextflowGPL-3.0000

R scripts for Illumina array analyses

Language:RGPL-3.0000

Annotate VCF files with Annovar

Language:RGPL-3.0000

Pipeline to run software quanTIseq in parallel to quantify immune cell content from RNA-seq data

Language:ShellGPL-3.0000

Fusion-genes discovery from RNAseq data using STAR-Fusion

Language:NextflowGPL-3.0000

RNAseq analysis pipeline

Language:HTMLGPL-3.0000

Transcript-level RNA-seq analysis

Language:HTMLGPL-3.0000

annotation of variants with annovar and nextflow

Language:NextflowGPL-3.0000