UoS-HGIG's repositories
Language:ShellMIT000
GenePy-1.3
Latest GenePy version compatible with both GRCh38 and GRCh37(hg19)
Language:Python000
GenePy-1.4
Latest GenePy version using Ensembl VEP annotation, gnomAD random forest flag. Incorporation of tri-allelic variants *in progress*
Language:ShellGPL-3.0000
Language:R000
grf
Generalized Random Forests
GPL-3.0000
SNPRelate
Codes for generating PCA plots from VCF files
Language:R000
peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
Language:Jupyter NotebookMIT000
VCF-liftover
Liftover VCF files
Language:Shell000