UcarLab / AMULET

A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.

https://ucarlab.github.io/AMULET/

UcarLab/AMULET Issues

human autosomes list of Amulet vs fragment file
Updated 20 days ago4
down stream analysis after running AMULET.sh
Updated 4 months ago5
Amulet output contains only Overlap file, there is no overlaps summary
Updated 9 months ago6
Multiome input
Updated 2 years ago8
Count Matrix before binarization and artificial doublets simulation
Updated 2 years ago3
Troubles with running doublet annotation part
Updated 2 years ago13
Use with outputs of scATAC-pro
Updated 2 years ago2
how can i find known repetitive elements like restrictionlist_repeats_segdups_rmsk_hg19.bed ?
Closed 3 years ago6
Truncated jar exceptions - Test files missing
Updated 2 years ago1
Can AMULET identify doublets with relatively low read counts from cells with a wide range of read counts
Updated 3 years ago9
How to individually evaluate simulated artificial doublets
Closed 3 years ago3
Cannot Run Multiplet Detection Vignette
Closed 3 years ago2
Low no. of multiplets detected than expected
Updated 3 years ago1
passing a list of barcodes
Closed 3 years ago
homotypic vs heterotypic multiplet output files
Updated 3 years ago1
Labels cycling cells as doublets
Updated 3 years ago2
Comment lines in fragments
Closed 3 years ago1
IndexError: too many indices for array: array is 1-dimensional, but 2 were indexed
Closed 3 years ago3
empty overlaps.txt
Closed 3 years ago6
Fragment files as input?
Closed 3 years ago1
Doesn't run
Closed 3 years ago6
how can I change this parameter MAPQTHRESHOLD=30 to 10?
Closed 3 years ago3
there is no such a file snATACOverlapCounter.jar
Closed 4 years ago1
Pre-print/manuscript available soon?
Closed 4 years ago2