Giters
USM-CHU-FGuyon
/
BlendedICU
OMOP standardization pipeline for ICU databases
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Stargazers:
23
Watchers:
1
Issues:
24
Forks:
6
USM-CHU-FGuyon/BlendedICU Issues
Clarification Needed on End Timing of Continuous Infusion in BlendedICU Database
Updated
25 days ago
Comments count
6
Question about config desired features
Closed
2 months ago
Comments count
4
Add support to Salzburg intensive care database (SICdb)
Closed
2 months ago
Comments count
1
diagnosis was not extracted and make conversion to CONDITION_OCCURRENCE table
Updated
4 months ago
Comments count
4
duplications in measurement and drug_exposure
Closed
4 months ago
Comments count
2
Use a proper unit converter for lab results
Updated
4 months ago
person_id Generation in OMOP data
Closed
5 months ago
Comments count
5
Query on Estimated Running Times Across different Datasets
Closed
5 months ago
Comments count
2
Harmonize ventilator modes
Updated
5 months ago
Comments count
2
Reading parquet before saving them as parquet will cause FileNotFoundError
Closed
5 months ago
Comments count
2
Update to MIMIC-IV v2.2
Closed
5 months ago
Comments count
3
person_id inconsistent in final OMOP death table
Closed
6 months ago
Comments count
3
Questions about categorization of some measurements
Closed
6 months ago
Comments count
2
Potential bug in 3_blendedICU.py
Closed
6 months ago
Comments count
1
Issues found in final OMOP files
Closed
6 months ago
Comments count
3
location_id Data Format in Person Table in final OMOP
Closed
6 months ago
Comments count
2
bugs in 4_write_omop.py or possibly the extracted data.
Closed
6 months ago
Comments count
5
Clarification regarding O2_saturation in AmsterdamUMC
Closed
8 months ago
Comments count
1
data/amsterdam_data/preprocessed_labels.parquet does not exist.
Closed
8 months ago
Comments count
4
UnicodeDecodeError when running 'python 1_extract_mimic3.py'
Closed
8 months ago
Comments count
1
Failed to run 1_extract_hirid.py
Closed
8 months ago
Comments count
2
MIMIC-III
Closed
9 months ago
Comments count
3
Pandas 2.1 compatibility
Closed
9 months ago
Missing env.yml Runtime Environment Configuration File
Closed
9 months ago
Comments count
2