TriticeaeToolbox

breedbase.R

An R package that helps generate breeDBase upload templates

BrAPI-germplasm-search

A BrAPI-powered bulk germplasm search API server and website

T3

The Triticeae Toolbox

avena

mason files for the avena database for the Jannink lab

brapi_sync_dockerfile

A dockerfile for the IntegratedBreedingPlatform/brapi-sync project

BrApp

BrAPI application

breedbase

The project structure for T3/Breedbase instances. This repository includes helper scripts, config files and mount directories for running T3/Breedbase instances of wheat, oat and/or barley.

breedbase_dockerfile

Forked from solgenomics/breedbase_dockerfile

breedbase_test

Docker-Compose and SGN configs for testing a breedbase image

docker-r-python

A Docker image with R and Python

ibp-oat-traits

Oat trait dictionary developed by Crop Ontology, Oat Global, T3 and PepsiCO

loading-scripts

Scripts for loading T3 data into a breeDBase instance

mason

Mason components for the T3 version of Breedbase

PHG

Practical Haplotype Graph

PHGv2

Practical Haplotype Graph from Katie Jordon with 473 accessions aligned to CSv2.1

postgres_dockerfile

docker file for breedbase postgresql instance

sgn

The code behind the Sol Genomics Network and Cassavabase website

BrAPI.R

Simple wrapper functions for making BrAPI requests

DataFromT3UsingBrAPI

ibp-barley-traits

ibp-wheat-traits

kelp

The user interface for the kelp database

ontology-scripts

Utility scripts for converting between trait ontology file formats

RShinyDemo

R Shiny App Demo for T3 - BrAPI integration

triticum

mason files for the triticum database for the Jannink lab