TransBio_NB's repositories
singlecelldb
An actionable database of publicly available single-cell RNA-seq data
GeneSetCluster
a tool for summarizing and integrating gene-set analysis results
scbert-reusability
Reusability report of scBERT
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
RNASEQ-Pair-end-Pipeline
Description of the different step in Pipeline RNAseq Pair End. From fastq to count tables. Then normalize and obtain the genes highly differentiated.
ictus-rankin-pred
Data analysis of ICTUS data for prediction of RANKIN scores
RNASEQ-Pipeline
Description of the different step in Pipeline RNAseq Single End. From fastq to count tables.
bcell
Gene Regulatory Network of early B cell differentiation in Humans
methylation-recipes
Scripts related to 450k and EPIC data analysis
moses
Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
rnaSeqBulkSnake
bulk RNA-seq processing pipeline using DESeq2, edgeR, Voom, implemented with snakemake
singlecelldb-sample-app
Sample Django app for SingleCell DB project
ClustALL_AD
ClustALL: A robust clustering strategy for stratification of patients with acutely decompensated cirrhosis.
GeneSetClusterShiny
Shiny app for gene set cluster tool
pyGREAT
Python wrapper for GREAT (http://great.stanford.edu)
X-PAND
X-PAND seeks to enable the “big leap” in correcting defective genes or instructing novel therapeutic functions into hematopoietic stem cells (HSC) by precise genome editing.