TongZhou2017

itol.toolkit

Helper Functions for Interactive Tree Of Life (iTOL)

ttfriends

An R package with toolkits for tong's friends

tech_tips

Technology tips

tong-s_must_read_list

papers read list about biology, bioinformatics, and others

ttnotion

Tong's notion API

breakaway

Species richness with high diversity

compare2

compare two status similarity

DATA

Data Analysis Task Achievement

deep-learning-papers

Papers about deep learning ordered by task, date. Current state-of-the-art papers are labelled.

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

hexSticker

:sparkles: Hexagon sticker in R

kmcp

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

microbiomeViz

Visualize microbiome data with black magic ggtree

microcosmos

scTools

Single cell data analysis tools

seurat

R toolkit for single cell genomics

SingleCell-papers

Paper list of single cell omics

STAMPr

Implement STAMP results using R

stuck_in_net

test

ttgenome

genome analysis and visulization tools

ttmetabolism

ttss

Tong's tools - second structure summary

itol.toolkit-gallery

itol.toolkit-tutorials-CN

iTOL可视化入门：itol.toolkit包使用教程

VnFinder

extract hypervariable regions of ribosomal RNA gene of eukaryota