KyleYu's repositories
YXK_Usefull_Tools
A simple python package for the beginner of Bioinformatics
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
TRACKPOSON
Pipeline to detect transposable elements (TEs) insertions polymorphism
AlleleFinder
AlleleFinder is a tool for identifying allele genes from polyploid genome.
ALLHiC
ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
ALLHiC_components
Some components that speed up and reduce resource cost for original ALLHiC
Ancestral_Genome_Reconstruction
Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
bioscripts
several scripts for bioinformatics
Finder
A fully automated gene annotator from RNA-Seq expression data
HaplotypeTools
A toolkit for identifying recombination and recombinant genotypes
JARVIS
JARVIS, a system to connect LLMs with ML community. Paper: https://arxiv.org/pdf/2303.17580.pdf
pandas-ai
Pandas AI is a Python library that integrates generative artificial intelligence capabilities into Pandas, making dataframes conversational
pyecharts
🎨 Python Echarts Plotting Library
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
SE-MEI
Tools for finding mobile element insertions from single-end datasets
SubPhaser
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
VCF2PCACluster
A new simple and efficient software to PCA and Cluster For popolation VCF File
wgdi
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes