TinTingLi's repositories
alphafold
Open source code for AlphaFold.
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
chromap
Fast alignment and preprocessing of chromatin profiles
CoV19_LLPS
phase separation of CoV19 proteins
ds-cheatsheets
List of Data Science Cheatsheets to rule the world
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
HiC_pipeline
An easy-to-use Hi-C data processing software supporting distributed computation.
higlass-docker
Builds a docker container wrapping higlass-server and higlass-client in nginx
kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
KANSL1_ChIP
reproducible codes of KANSL1 ChIP-seq expr.
MetBrewer
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
primer3-py
Simple oligo analysis and primer design
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
scikit-learn
scikit-learn: machine learning in Python
sedef
Identification of segmental duplications in the genome
swarm
A robust and fast clustering method for amplicon-based studies
TRF
Tandem Repeats Finder: a program to analyze DNA sequences
tushare
TuShare is a utility for crawling historical data of China stocks
vgp-assembly
VGP repository for the genome assembly working group
Wudao-dict
有道词典的命令行版本，支持英汉互查和在线查询。