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ThomasDOtto

ThomasDOtto

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Company:University of Glasgow

Location:Glasgow

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ThomasDOtto's repositories

ILRA

Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs, correct homopolymer tracks and circulate plastids. We also have the code preinstalled on a virtual linux machine.

Language:HTMLLicense:GPL-3.0Stargazers:9Issues:0Issues:0

ratt

Rapid Annotation Transfer Tool

Language:PerlLicense:GPL-3.0Stargazers:8Issues:0Issues:0

IPA

Script to improve long read (pacbio) assemblies

Language:PerlLicense:GPL-3.0Stargazers:3Issues:0Issues:0

varDB

Script how to assemble var genes in Plasmodium falciparum

Language:PerlLicense:GPL-3.0Stargazers:5Issues:0Issues:0

t-SNE-UMAP_covid_Example

Some code to plot 4 scRNA-Seq datasets with different methods

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:0Issues:0Issues:0

eupathws

Data dumper for EuPathDB

License:NOASSERTIONStargazers:0Issues:0Issues:0

IMID-Bio-UK

The script and method repository of the IMIDB-Bio-UK consortium

Stargazers:0Issues:0Issues:0

eupathtables

Python interface for reading and converting EuPathDB flat file dumps

License:NOASSERTIONStargazers:0Issues:0Issues:0

QISeq

A bioinformatical pipeline to process Quantitative Insertion-site Sequencing (QIseq) samples

Language:PerlLicense:GPL-3.0Stargazers:4Issues:0Issues:0