Begoniamatters's repositories
Basic_Hyb_Seq_Assembly
A simple Hyb_Seq pipeline for conservatively called consensus sequence
Language:Shell000
Language:R000
DADA2_Phyloseq
A DADA2 pipeline using rbcl markers libraries and a Phyloseq script to output graphical results.
Language:R000
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
Language:PythonMIT000
KewHybSeqWorkshop
Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.
Language:PythonMIT000
phyluce
software for UCE (and general) phylogenomics
Language:PythonNOASSERTION000
ROH-pipeline
This pipeline has been developed to estimate inbreeding levels and recent demographic events with Runs of Homozygosity (ROH) from single herbarium specimens.
Language:Python000
Species-delimitation-using-BEAST
DISSECT trials using data from Species delimitation without prior knowledge, Toprak (2016)
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Targeted_enrichment
Scripts and outline of pipeline to generate robust consensus sequence from targeted captured reads
Language:Perl000