Tim Van Rillaer's repositories
16S-Metatranscriptomic-Analysis
NextFlow Pipelines for Qiime2 & Kraken2 metagenomic|metatranscriptomic analyses
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
BiobakeryUtils.jl
A companion package for Microbiome.jl for working with the Biobakery family of computational tools
CAT_pack
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
cocpyth
Command line interface to generate Call of Cthulhu characters
dnd-character
library for making Dungeons & Dragons 5e characters as serializable data
etn
Electronic Traineeship Notebook for BIT @ HOME
GTDBTk-docker-cli
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
phlogiston
Python package to work with fictional star chart data.
kraken2
The second version of the Kraken taxonomic sequence classification system
mag
Assembly and binning of metagenomes
Miniature_Pallete
Extracting miniature painting colors from an image
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
multidiffabundance
A toolkit for the testing of differential abundance with many different tools
SCARAP
A toolkit for prokaryotic comparative genomics
scikit-optimize
Sequential model-based optimization with a `scipy.optimize` interface
taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun and long-read metagenomic data
test-datasets
Test data to be used for automated testing with the nf-core pipelines
theoafidian.github.io
My page about brewing recipes