teo's starred repositories
BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
ml-theory-reading-list
An annotated reference list of ML theory
tuning_playbook
A playbook for systematically maximizing the performance of deep learning models.
comp-genomics-class
Code and examples for JHU Computational Genomics class
Zuin_Roth_2021
matlab codes used for the model fitting
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
ads1-slides
Slides for Algorithms for DNA Sequencing Coursera class
tensorflow-riemopt
A library for optimization on Riemannian manifolds
morphogenesis-resources
Resources on the topic of digital morphogenesis (creating form with code). Includes links to major articles, code repos, creative projects, books, software, and more.
graph-based-deep-learning-literature
links to conference publications in graph-based deep learning
machine_learning_refined
Notes, examples, and Python demos for the 2nd edition of the textbook "Machine Learning Refined" (published by Cambridge University Press).
pytorch_geometric
Graph Neural Network Library for PyTorch
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
hugo-blox-builder
🚨 GROW YOUR AUDIENCE WITH HUGOBLOX! 🚀 HugoBlox is an easy, fast no-code website builder for researchers, entrepreneurs, data scientists, and developers. Build stunning sites in minutes. 适合研究人员、企业家、数据科学家和开发者的简单快速无代码网站构建器。用拖放功能、可定制模板和内置SEO工具快速创建精美网站！
py-wsi
Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.
deep-histopath
A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge