TypeError: info() got an unexpected keyword argument 'r

[AkiraNom]

Good afternoon,

I'm running on the pbmc notebook with python 3.7.7, Scanpy 1.5.1, bbknn 1.3.3. After running the bbknn, the following error message appeared. I tested the "sc.external.pp.bbknn," and the same message was shown. Updating the version to python 3.8.0, scanpy 1.6.0 did not work either.

TypeError Traceback (most recent call last)
in
----> 1 bdata = bbknn.bbknn(adata,batch_key='Sample',copy=True)

~\Anaconda3\lib\site-packages\bbknn_init_.py in bbknn(adata, batch_key, approx, metric, copy, **kwargs)
259 If True, return a copy instead of writing to the supplied adata.
260 '''
--> 261 logg.info('computing batch balanced neighbors', r=True)
262 adata = adata.copy() if copy else adata
263 #basic sanity checks to begin

TypeError: info() got an unexpected keyword argument 'r'

Do you have any idea what causes this error? Thank you.

[Krzysztof Polanski]

Update bbknn. The fix to this was introduced in 1.3.5.