Teichlab / bbknn

Batch balanced KNN

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Collaboration

jumphone opened this issue · comments

Hi, Authors of BBKNN,

My name is Feng Zhang. I recently build a pipeline (BEER, published in Cell Discovery, https://github.com/jumphone/BEER) to remove batch-effect related PCA subspaces.

And I find that it works well when combing it with BBKNN (especially when integrating scRNA-seq and scATAC-seq data).

Maybe we can collaborate with each other to further improve the performance.

Best,
Feng Zhang