TCP-Lab / MTP-DB

The Membrane Transport Protein Database

TCP-Lab/MTP-DB Issues

Make the Diseases and Function data more useful
Updated a year ago
Add information from the GO to other tables
Updated a year ago
Misplaced ICT entries in some tables of the database
Closed a year ago
Might find indexes on tables useful
Updated a year ago1
The release database file should have a fixed file name
Closed a year ago1
The 'all contributors' badge is on a different line in the README
Closed a year ago
Many known Ca2+ ion channels are missing from the repository
Updated a year ago
Add contributors using AllContributors
Closed a year ago2
Milestone Tracking - Create an interface to the database
Updated a year ago
Milestone Tracking - Test the Database
Updated a year ago
Milestone Tracking - Release the Database
Closed a year ago1
The relative conductances in the channels table are broken
Closed a year ago1
The Top-down and Bottom-up geneset approaches should be swapped
Closed a year ago1
Download from Ensembl/BioMart is very slow
Updated a year ago1
Some Ion Channels are missing from the Channels table
Closed 2 years ago
Create a runner script to run the whole analysis
Closed a year ago1
GABA and Glutamate ionotropic receptors are not correctly annotated
Closed 2 years ago1
GSEA plotting graphs should become a runnable script
Closed 2 years ago
"Volume" gated Ion Channels might be different than stretch gated ICs
Updated a year ago
The gating mechanism cols should be fused together
Closed 2 years ago
HGNC-appointed ligand gated ion channels are too few
Closed 2 years ago1
Dual gating mechanism (voltage and ligand) for ryanodine receptors.
Closed 2 years ago
Ligand information is missing for ligand-gated channels
Closed a year ago3
KCNK genes are incorrectly categorized as voltage-gated
Closed 2 years ago1
There is no CI test pipeline in place
Updated a year ago
Stretch Gated Ion Channels are not populated
Updated a year ago
Leakage Ion Channels are not explicitly listed
Updated a year ago2
Define GSEA gene lists
Closed 2 years ago1
Normalize solute symbolic representations
Closed 2 years ago1
Validate SLC table solutes to remove the warnings
Closed 2 years ago1
Write a thesaurus for solute entries
Closed 2 years ago2
Mark gap junctions in the channels list
Updated 2 years ago1
Use HGNC groups to annotate transporters that have no conductance information
Closed 2 years ago
The ABC transporters have no solutes/stoichiometry information
Closed 2 years ago
The atp-driven transporters have no solutes/stoichiometry information
Closed 2 years ago