TAlexPerkins

sarscov2_unobserved_example

Zika_nmicrobiol_2016

Model-based projections of Zika virus infections in childbearing women in the Americas

sarscov2_unobserved

Estimating unobserved SARS-CoV-2 infections in the United States

covid19_NDmobility_forecasting

PlosCompBio_2013

code for generating figures and table from doi:10.1371/journal.pcbi.1003327

TimeSeriesSpatialScale

Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data

ActivitySpace_JRSI2014

Theory and data for simulating fine-scale human movement in an urban environment

SARSCoV2_BLCM

chik_ploscurrents_2015

Estimating Drivers of Autochthonous Transmission of Chikungunya Virus in its Invasion of the Americas

Chikungunya-in-Brazil-2013-2022

This collection refers to aggregate epidemiological data used in the article “Spatiotemporal dynamics and recurrence of chikungunya virus in Brazil: an epidemiology study” published at The Lancet Microbe, 2023 (in press). The individualized data can be provided on request to corresponding author.

covid19optimalcontrol

Optimal control of the COVID-19 pandemic with non-pharmaceutical interventions

dispersal_tradeoffs

fever_mobility

Calling in sick: impacts of fever on intra-urban human mobility

install-guide

IquitoSim_PLOSCompBio_2019

code for IquitoSim agent-based model of dengue virus transmission

malaria_serial_interval

generation and serial intervals for P. falciparum malaria

movement

R package containing useful functions for the analysis of movement data in disease modelling and mapping

panoptes

Eyes on your data

ssm

Inference for State Space Models like playing with duplo blocks

TD-STRU

SSM tutorial classes

yf_ensemble