SynapticSage

github2file

ry's fork of github2file :: modified for multi-file type and allowing local zip file input ... useful for passing githubrepo to gemini/claude/etc

mlab-utils

(🌌🔍 Vastly simplifies working with filter-framework datafiles...📂💡) Collection of core tools I've built to deal with fillter framework and nd branched cell types in JLab.

CA1PFC_blender_models

3D brain models for pubs and presentations

Neural_Realime-ClosedLoop-PhaseDisruption

RY's module for real-time, closed-loop interruption of brain activity --- detects theta (or beta) phase and triggering optogenetic disruption using the SpikeGadgets software environment (https://spikegadgets.com/)

ThetaCoherence

Initial exploratory code into coherence at track points of interest.

Bettermarks

Bookmarking system for Bash and Zsh

CommandLine_Tetris

Implemented Tetris at the command-line terminal (pure text characters, no GUI) in C++ for fun. About a week of code. Originally tested in PowerShell.

config

git control of my key configuration files (neovim, spacemacs, and tmux)

GIN

Machine Learning for Olfactory datasets -- "G_raph I_nference for N_oses". Downstream goal: odorant mixtures. (ryan's code)

mountainsort-2-phy

Converts moutainsorted clusters to phy for curation using SpikeInterface. Includes a plugin to add mountainsort cluster metrics to phy.

MuseEEGHeadset-Scrubber

Scrubs data from Muse EEG headset into a Tidy Data format. https://www.wikiwand.com/en/Tidy_data

Reaction-Time-from-EEG_MuseHeadset

This library learns to estimate human reaction times from consumer EEG data.

TetroMate__GoogleAssistant

Google Assistant driven tetrode lowering. Let's you take notes about how tetrodes are being lowered with convenient voice commands. Works well with natural language e.g. "lower 5 on tetrode 6" or just "5 on 6", or even other variations. Automatically creates a webpage table representing your tetrode lowering notes.

DI.jl

Julia based Data Interface for my electrophysiology and behavior data. All data types are Tidy Data based DataFrame objects (rows=samples, cols=properties of samples)

DIutils

This package split from a much larger git repo that comprised my julia lab code environment. Contains my homebrew utilties used on DI.jl based neural data analysis. Short one-off functions I lean on to save time often go here.

embed

CLI for embedding (RY's)

fabric

ryoungs fork -- storing commonly used CLI prompts ----- fabric is an open-source framework for augmenting humans using AI. It provides a modular framework for solving specific problems using a crowdsourced set of AI prompts that can be used anywhere.

julia-party-parrot

julia party parrot animation for funsies

Metaprompt

a library that focuses of metaprompting built atop core conversations exported from google ai studio.

mods_whisper_real_time

ryoung mods, Real time transcription with OpenAI Whisper.

NeuroMetrics.jl

Contains Julia code for a large variety of analyses, from manifolds, to pseudocausality, to TCA, to time-shifted receptive field analyses.

orgroam2obsidian

Small script that ports your Org Roam notes to Obsidian

Plots.jl

(ryoung mods) Powerful convenience for Julia visualizations and data analysis

RatInABox

(ryoung mods) A python package for modelling locomotion in complex environments and spatially/velocity selective cell activity.

RedditCommentBackup

Resume-Matcher

Resume Matcher is an open source, free tool to improve your resume. It works by using language models to compare and rank resumes with job descriptions.

RNN-AttractorNetwork-NewsomeShadlinTask

This library instantiates an RNN to solve Newsome & Shadlin's task -- two types of input and a context to decide which to attend. It does so with an itinerating attractor network.

SynapticSage

temp

token-count