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Kohei Sugimoto (SugimotoKohei)

SugimotoKohei

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Kohei Sugimoto's starred repositories

medical_dataset

医用画像データセットのリンク集（随時更新）

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dMRIMC

MC simulation framework for histology-informed diffusion MRI

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MRSegmentator

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safe_pns_prediction

Matlab implementation of peripheral nerve stimulation (PNS) prediction at Siemens MRI systems based on the SAFE model by Herbank and Gebhardt.

Language:MATLABLicense:BSD-3-ClauseStargazers:16Issues:0Issues:0

multicomponent-T2-toolbox

Non-parametric T2 relaxometry methods for myelin water quantification

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MyoQMRI

Quantitative methods for muscle MRI

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pymp2rage

Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data

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epgpy

A user-friendly python library for simulating NMR signals using the Extended Phase Graph (EPG) formalism.

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EPG

Documented example codes for the calculation of Extended Phase Graphs in MRI.

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sycomore

MRI simulation toolkit

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MRSignalsSeqs

Stanford University Rad229 Class Code: MRI Signals and Sequences

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Meshes.jl

Computational geometry and meshing algorithms in Julia

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KomaMRI.jl

Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development.

Language:JuliaLicense:MITStargazers:108Issues:0Issues:0

SpinDoctor.jl

Diffusion MRI Simulation Toolbox in Julia

Language:JuliaLicense:GPL-3.0Stargazers:17Issues:0Issues:0

MP2RAGE_EPG_simulations

Extended Phase Graph (EPG) Simulations of the MP2RAGE Sequence including T2 relaxation, diffusion, radio frequency spoiling, and B1+ variability

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PF-MRI-Reconstruction

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twixtools

python file reader/writer for Siemens MRI raw data + compression utility

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rpg-degibbs

Removal of Partial-Fourier induced Gibbs-ringing (RPG) in Lee et al., Magn Reson Med 2021

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monte-carlo-simulation-recipes

Recipes of Monte Carlo simulations in Fieremans and Lee, NeuroImage 2018

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lungmask

Automated lung segmentation in CT

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mcsd

MATLAB/Octave tool for Monte-Carlo simulations of diffusion in biological tissues

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monte-carlo-simulation-3D-RMS

Monte Carlo simulations in Lee, et al., Commun Biol 2020 and J Neurosci Methods 2020

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mati

MATI (Microstructural Analysis of Tissues by Imaging)

Language:MATLABLicense:BSD-2-ClauseStargazers:7Issues:0Issues:0

packing-generation

Hard-sphere packing generation in C++ with the Lubachevsky–Stillinger, Jodrey–Tory, and force-biased algorithms and packing post-processing.

Language:Jupyter NotebookLicense:MITStargazers:102Issues:0Issues:0

axonpacking

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dmipy

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

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EPG-X

Extended Phase Graphs for systems with Magnetization Transfer and Chemical Exchange

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epg

Extended phase graph (EPG) simulation in Python

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EpyG

a toolset for MRI signal calculations using the Extended Phase Graph algorithm implemented in Python

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MRI-education-resources

Resources for learning the principles of magnetic resonance imaging (MRI)

Language:Jupyter NotebookLicense:MITStargazers:101Issues:0Issues:0