Ana Stojiljkovic's repositories
napari-morphodynamics
A napari plugin to use as interface for the morphodynamics package
napari-convpaint
Segment images by pixel classification based on pre-trained convolutional layer feature extraction
CBIAS2023
Here are some useful files for the napari course @CBIAS2023
BernMICscripts
Collection of image processing scripts developed at the Microscopy Imaging Center of the University of Bern
napari-roidynamics
napari plugin wrapping the Python package 'roidynamics' into an-easy-to-use interactive tool to analyze the dynamics of intensity in time-lapse microscopy images split into regions of specific geometries
MorphoDynamics
A Python package for tracking the deformation of biological cells.
MIA_MyFavouriteTool_NEUBIAS
This is an examplar workflow to analyze gamma h2ax foci in 2D images. The aim of this workflow is to demonstrate some basic functionalities of the ImageJ plugin ModularImageAnalysis(MIA)
pyadvcourse_VetAna
Advanced python course
TidyTuesday
Our contributions to "Tidy Tuesday" (https://github.com/rfordatascience/tidytuesday)
HCA-to-investigate-senescence
CellProfiler pipelines used for the analysis of the data published as pre-print "High-content analysis reveals senescence of cultured canine adipose-derived mesenchymal stromal cells to be reversible with a novel immortalization approach"