SmartDataAnalytics / BioKEEN

A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://github.com/pykeen/pykeen/

https://github.com/pykeen/pykeen/

SmartDataAnalytics/BioKEEN Issues

Applications to chemogenomics data
Closed 2 years ago
ComPath Experiment
Closed 2 years ago
Check whether the download of the database was interrupted
Closed 2 years ago2
Transitive Closures on a Given BEL Network
Closed 2 years ago
Make docker container
Closed 2 years ago
Hyperparameter optimization
Closed 2 years ago1
ImportError: cannot import name 'VERSION' from 'pykeen.constants'
Closed 3 years ago1
A problem of installation based on Linux
Closed 4 years ago3
Add BEL Commons importer
Closed 5 years ago
KEGG is empty
Closed 5 years ago1
MSig is empty
Closed 5 years ago
Reactome is empty
Closed 5 years ago
Wikipathways is empty
Closed 5 years ago2
Exception while Accessing miRTarBase
Closed 5 years ago1
bio2bel_interpro 0.1.1 requires networkx-1.11 -> conflict with pybel 0.12.2
Closed 5 years ago1
Hippie is empty
Closed 5 years ago
URLError when loading ComPath
Closed 5 years ago3
Inconsistency in ComPath
Closed 5 years ago
BEL converter fails to handle equivalentTo relationships
Closed 5 years ago
Update Bio2BEL table in docs
Closed 5 years ago
ModuleNotFoundError: No module named 'pybel.typing'
Closed 5 years ago
Write tests for convert.py
Closed 5 years ago
Add codecov badge
Closed 5 years ago
mirtarbase
Closed 5 years ago3
Fix warnings flake8
Closed 5 years ago
Remove duplicated triples from KGs
Closed 6 years ago2
Dependency link to KEEN prefers PyPI over GitHub
Closed 6 years ago