Simon Gladman's repositories
ansible-pulsar
An Ansible role for managing a Pulsar (https://github.com/galaxyproject/pulsar) server.
bioconda-recipes
Conda recipes for the bioconda channel.
biotool
Proverbial biotool implemented in multiple languages
comp90014_workshops
Programming tutorials used in COMP90014 labs.
degust-1
An interactive web-tool for RNA-seq analysis
FROGS
FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
galaxy-metabolomics
Scripts/tools for galaxy.
galaxy_wrappers
Repo for my galaxy wrappers and associated packages
gatkworkshop
Script to install GATK for Broad workshop on GVL standard flavour.
gvl-learn
temporary place to put gvl learn html page
gvl.ansible.smrt_analysis
Ansible scripts for setting up the smrt analysis portal on a GVL
gvl.ansible.web_apollo
Ansible to install Web Apollo in a GVL instance
infrastructure-playbook
Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
infrastructure-playbook-1
Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
lscc_docs
LSCC documentation in markdown format
mlst
:id: Scan contig files against PubMLST typing schemes
nullarbor
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
nullarbor-ansible
Ansible script to install torsten seemann's nullarbor tool onto a GVL machine.
planets2
Notes on suitability of various planets for a crewed mission
pulsar-network-docs
Documentation for the Galaxy Pulsar network
SauerEnrichmentAnalysis
Functions for implementation of Sauer isotope labeling calculation
sparqlwrapper-feedstock
A conda-smithy repository for sparqlwrapper.
VelvetOptimiser
Automatically optimise three of Velvet's assembly parameters.