Simontuk

academic-kickstart

📝 Easily create a beautiful website using Academic, Hugo, and Netlify

arules

Mining Association Rules and Frequent Itemsets with R

badger

Bayesian approach for detecting copy number alterations from single cell RNA-seq data

dotfiles

my own dotfile backup

dotfiles-1

A set of vim, zsh, git, and tmux configuration files.

dotpandoc

Pandoc Data directory, including filters and templates for producing multiple outputs for academic content.

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

hdlatex

Heidelberg MoBi Latex repro

hello_world

First GitHub repo

linter-lintr

Lint R on the fly, using lintr

miloR

R package implementation of Milo for testing for differential abundance in KNN graphs

pagoda2

prezto

The configuration framework for Zsh

pyscenic

rna_seq

RNA-Seq and Cell cycle annotation

Rtsne.multicore

R wrapper for Multicore t-SNE

scde_SAS

R package for analyzing single-cell RNA-seq data

SIMLR

Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch), implementations of the method published in http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.4207.html. Also see http://biorxiv.org/content/early/2017/03/21/118901 for a description of the software.

Simontuk_Website

singularity-r

R in a Singularity container

singularity-rstudio

RStudio Server in a Singularity container

singularity-rstudio-bio

Rstudio Container based on CentOS R including a core set of important R packages in the "/library" directory of the container

smrnaseq

A small-RNA sequencing analysis pipeline

splatter

Simple simulation of single-cell RNA sequencing data

sprint_covseq

Covseq-pipe nextflow

swirl_courses

A collection of interactive courses for the swirl R package.

turbo-pancake

velocyto.R

RNA velocity estimation in R

Wflow-Test