SimingK's repositories
2ndGS_Pipelines
Perl 5 and R source codes for next generation (the second generation) sequencing data analysis by integrating lots of open-source softwares.
alzheimers_parkinsons
Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
aneuploidy_scrnaseq
Detection of aneuploidy using scRNA-seq data from human embryos.
coding-interview-university
A complete computer science study plan to become a software engineer.
deeplearning.ai-notes
吴恩达《深度学习》学习笔记(xmind)、作业代码、代码视频讲解
DevomicsDataProcessing
Devomics
EmbryoTimecourse2018
Data and analysis scripts for our Embryo Timecourse paper.
hello-world
just a new repository
hmmcopy_utils
Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.
MPAL-Single-Cell-2019
Publication Page for MPAL Paper 2019
once-again
to confirm this process
pandas_exercises
Practice your pandas skills!
PipiDABS
PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.
scell_lung_adenocarcinoma
This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
scnmt_gastrulation
scNMT-seq gastrulation
scNOMeRe-seq
single-cell nucleosome occupancy, methylome and RNA expression sequencing
scRNA.seq.course
Analysis of single cell RNA-seq data course
Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage
Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversification during foregut organogenesis
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
SomeRecords
Some very useful records for me.