Simina M. Boca's repositories
Fdr-regression
Code for "A direct approach to estimating false discovery rates conditional on covariates" by SM Boca and JT Leek
DMD-metabolomics
Code for analysis of metabolomics data for DMD natural history study
Presentations
Talks, posters, workshops
DMD-mdx-pred-metabolomics
Code for analysis of metabolomics data for DMD mdx mouse model
SiminaB.github.io
Repository for blog posts
Bias-estimating-life-expectancy-Morquio
Bias for estimating life expectancy from age at death: A simulation approach applied to Morquio Syndrome A
cdgnet-package
CDGnet package for shiny app
covid19-review
A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19
deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
ER-breast-cancer-resistance
Data from Shajahan-Haq et 2017 Oncotarget paper
Heterozygosity-and-admixture
Code for article "On the heterozygosity of an admixed population"
nfpmShinyComponent
This package provides an API for interactive network visualization of gene-drug and gene-gene interactions.
popadmix-app
For summer intern
popadmix-pkg
A package to calculate heterozygosity, Fst and make plots about them.
R_example_code
Various examples of R code, R markdown code etc
FDA-approved-Targeted-Therapies-Label-Extraction
Extract FDA approved target therapy and related gene, protein, disease, and medication labels from HTML
github-slideshow
A robot powered training repository :robot:
hello-world
Doing this for practice!
qc-reports
QC reporting infrastructure for the CPTAC3 CDAP
Spoon-Knife
This repo is for demonstration purposes only.