Silja Heilmann's repositories
FindLoopsInPancreas
MATLAB code for extracting lumenal network from IHC images of mouse pancreas and find loops!
GitCourseDemo
Test repo for Git Github heaDS course
plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
TipScore
MATLAB functions for image analysis of branched organ structures (such as the pancreas).
pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
oh-my-zsh
A delightful community-driven framework for managing your zsh configuration. Includes 200+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc), over 140 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.