Siddharth Uppal (Sidduppal)

Sidduppal

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Company:School of Pharmacy, University of Wisconsin-Madison

Location:Madison, WI

Twitter:@SiddUppal

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Siddharth Uppal's starred repositories

biotite

A comprehensive library for computational molecular biology

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FigureOneLab

Hone computational biology skills by re-enacting Figure 1 of modern biology papers

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datasets

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

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earthly

Super simple build framework with fast, repeatable builds and an instantly familiar syntax – like Dockerfile and Makefile had a baby.

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CBBI

đź“Š The official Python implementation of the ColinTalksCrypto Bitcoin Bull Run Index (CBBI)

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ggsignif

Easily add significance brackets to your ggplots

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jgi-query

A simple command-line tool to download data from Joint Genome Institute databases

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bit

Bioinformatics Tools

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MonoPhylo

A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.

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COGclassifier

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

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gggenomes

A grammar of graphics for comparative genomics

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pyCirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

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pyGenomeViz

A genome visualization python package for comparative genomics

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awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

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TreeCluster

Efficient phylogenetic clustering of viral sequences

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MuDoGeR

MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.

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GenoVi

GenoVi, an automated customizable circular genome visualizer for bacteria and archaea

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bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

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bitcoin

Bitcoin Core integration/staging tree

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evm-chad

A curated list of the hottest and most fresh resources to become an EVM chad

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abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

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ganache

:warning: The Truffle Suite is being sunset. For information on ongoing support, migration options and FAQs, visit the Consensys blog. Thank you for all the support over the years.

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full-blockchain-solidity-course-py

Ultimate Solidity, Blockchain, and Smart Contract - Beginner to Expert Full Course | Python Edition

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cryptozombies-lesson-code

cryptozomebie lesson code

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ComplexHeatmap

Make Complex Heatmaps

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bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

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