Shunsuke-1994

alphafold3-pytorch

Implementation of Alphafold 3 in Pytorch

AptaDiff

init commit

RiboDiffusion

ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

GARNET_DL

benchmark_VAE

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

generative-ai-for-beginners

18 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

RoseTTAFold-All-Atom

RiNALMo

RiboNucleic Acid (RNA) Language Model

EternaFold

Improving RNA structure prediction through multitask learning on diverse crowdsourced data.

draw_rna

Draw RNA secondary structures in python.

evo

Biological foundation modeling from molecular to genome scale

circuitree

Gene circuit design using Monte Carlo tree search

RibonanzaNet

rna3db

A dataset for training and benchmarking deep learning models for RNA structure prediction

geometric-rna-design

gRNAde: Geometric Deep Learning for 3D RNA inverse design

REPrise

REPrise is de novo interspersed repeat detection software.

GenerRNA

SwitchFinder

fepsuite

Software package for FEP

alphamissense

learn-aws-by-coding

コードで学ぶAWS入門

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

RNAProt

Modelling RBP binding preferences to predict RPB binding sites

patchworklib

Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

boltzmann_generators

A repository for the final project implementing/applying Boltzmann generators for Computational Statistical Physics (PHYS 7810) at CU Boulder

PyAutoFEP

PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods

LoRA

Code for loralib, an implementation of "LoRA: Low-Rank Adaptation of Large Language Models"

pyhmmer

Cython bindings and Python interface to HMMER3.

ghibli

Studio Ghibli colour palettes

fr3d-python

Python implementation of the FR3D software for searching and annotating RNA 3D structures