Shunsuke-1994

generative-ai-for-beginners

18 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

LoRA

Code for loralib, an implementation of "LoRA: Low-Rank Adaptation of Large Language Models"

benchmark_VAE

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

evo

Biological foundation modeling from molecular to genome scale

alphafold3-pytorch

Implementation of Alphafold 3 in Pytorch

RoseTTAFold-All-Atom

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

alphamissense

ghibli

Studio Ghibli colour palettes

learn-aws-by-coding

コードで学ぶAWS入門

patchworklib

Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

PyAutoFEP

PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods

geometric-rna-design

gRNAde: Geometric Deep Learning for 3D RNA inverse design

pyhmmer

Cython bindings and Python interface to HMMER3.

EternaFold

Improving RNA structure prediction through multitask learning on diverse crowdsourced data.

RiNALMo

RiboNucleic Acid (RNA) Language Model

draw_rna

Draw RNA secondary structures in python.

rna3db

A dataset for training and benchmarking deep learning models for RNA structure prediction

GARNET_DL

RiboDiffusion

ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

boltzmann_generators

A repository for the final project implementing/applying Boltzmann generators for Computational Statistical Physics (PHYS 7810) at CU Boulder

fr3d-python

Python implementation of the FR3D software for searching and annotating RNA 3D structures

SwitchFinder

fepsuite

Software package for FEP

GenerRNA

RNAProt

Modelling RBP binding preferences to predict RPB binding sites

RibonanzaNet

REPrise

REPrise is de novo interspersed repeat detection software.

circuitree

Gene circuit design using Monte Carlo tree search

AptaDiff

init commit