Shunsuke-1994 / PyQsep

a Qsep parser by Python

PyQsep

a Python script for parsing Qsep100(DNA Fragment Analyzer from BiOptics inc.) files.
Generates signal-time csv data by interpolating peak-time relation.
input:
- raw signal data(csv)
- report file (xlsx)
output:
- csv file containing time/signal/estimated bp

Version

0.2

Requirements

• scipy >1.2.1
• pandas

Usage

python pyqsep.py --signal example/signal.csv --report example/report.xlsx --output example/test.csv

TODO

• upate to applicable to various running modes.
• batch processing.

Author

Shunsuke Sumi