Shrishtee kandoi's repositories
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
xqtl-pipeline
Molecular QTL data analysis pipeline developed for ADSP functional genomic consortium
BF591-assignment-3
Assignment repository for R for Biological Sciences - Week 3
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
r-color-palettes
Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜
ExpansionHunter
A tool for estimating repeat sizes
GangSTR
A tool for profiling long STRs from short reads
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
GWAS-pipeline
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
Intro-to-rnaseq-hpc-O2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
STRetch
Method for detecting STR expansions from short-read sequencing data