Dylan Nielson's repositories
coders_forum
A repo to document the tutorials/rants/discussions/musings at the coder's forum
1806
18.06 course at MIT
afni_colorbar_proposal
Quick demo of a proposed enhancement for colorbars to work with AFNI's alpha-boxed color maps.
CBCL_Aff_Validation
Code for the manuscript on validation of CBCL-Aff on three datasets (ABCD, HBN, BHRC)
cogmood_backend
Tools for serving and storing data from online experiments.
epe
Data and code for Emotion Prediction Errors
fitlins
Fit Linear Models to BIDS Datasets
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
freesurfer
recon-all from FreeSurfer
kneed
Knee point detection in Python :chart_with_upwards_trend:
Liston-Laboratory-MultiEchofMRI-Pipeline
Repository for "Rapid precision mapping of individuals using multi-echo fMRI"
model-zoo
Zoo of BIDS Stats Models (extraordinarily experimental)
mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
neurodocker
Generate Docker images with neuroimaging packages
opendata
Collection of publicly available behavioral datasets
openneuro
A free and open platform for analyzing and sharing neuroimaging data
pybids
Python tools for querying and manipulating BIDS datasets.
pymer4
All the convenience of lme4 in python
semTools
Useful tools for structural equation modeling
Targeted-Functional-Network-Stimulation
Code for implementing the Targeted Functional Network Stimulation (TANS) approach described in "Automated optimization of TMS coil placement for personalized functional network engagement", Lynch et al. 2022 (Neuron).
tedana
TE-dependent analysis of multi-echo fMRI