Shogosuga

PHILOW

Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets

EMDiffuse

sam-pt

SAM-PT: Extending SAM to zero-shot video segmentation with point-based tracking.

sofima

Scalable Optical Flow-based Image Montaging and Alignment

MorphoFeatures

MorphoFeatures code and data

Transformer_for_medical_image_analysis

A collection of papers about Transformer in the field of medical image analysis.

research-contributions

Implementations of recent research prototypes/demonstrations using MONAI.

keras-unet-collection

The Tensorflow, Keras implementation of U-net, V-net, U-net++, UNET 3+, Attention U-net, R2U-net, ResUnet-a, U^2-Net, TransUNET, and Swin-UNET with optional ImageNet-trained backbones.

PSSR

Deep Learning-Based Point-Scanning Super-Resolution (PSSR)

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

3dunet

airway segmentation

BiaPy

Open source Python library for building bioimage analysis pipelines

segmentation_models

Segmentation models with pretrained backbones. Keras and TensorFlow Keras.

TransUNet

This repository includes the official project of TransUNet, presented in our paper: TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation.

cem-dataset

Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.

image-segmentation-keras

Implementation of Segnet, FCN, UNet , PSPNet and other models in Keras.

lstm_multi_modal_UNet

[ICIVC 2019] "LSTM multi-modal UNet for Brain Tumor Segmentation"