Shao Group

Shao Group's repositories

lecture-notes-for-algorithms

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cmpsc465-fa20

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scallop2

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subseqhash

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rnabridge-align

rnabridge-align is an efficient tool to bridge paired-end RNA-seq reads

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irtool

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lsbucketing

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metagenome-analysis

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rnabridge-denovo

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SubseqHash2

Fast, SIMD-accelerated, multi-set seeding algorithm for error-prone sequences

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TERRACE

An assembler for circular RNAs

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altai

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bamkit

A tool to process bam/sam files

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kbhashing

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rnabridge-test

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altai-test

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aletsch

Assembler for multiple RNA-seq samples

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aletsch-test

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anchorage

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anchorage-test

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fracSubseqHash

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kmerspace

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lsb-learn

A learning algorithm for locality-sensitive bucketing functions

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repeatFinder

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repeats

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scAletsch

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scAletsch-test

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scallop2-test

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TERRACE-test

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