ShanSabri

oriFinder

🎯 Pinpoint the origin of replication (oriC) for bacterial genomes

SSFold

🧬 A Dynamic Programming Algorithm for Predicting Optimal RNA Secondary Structure

BioPerl

Perl/BioPerl Scripts from JHU AS.410.698.81.SP13

cayman-theme

A responsive theme for GitHub Pages

fmm

〰️ My attempt at fitting Finite Mixture Models from scratch

iCLIP

✂ A few scripts used to demultiplex and process iCLIP data

Rainbow-analysis

Reproducible analysis of our Rainbow manuscript

JubRi

🧩 A method for literature-based keyword ontology

modified-Levenshtein

🔤 A direct and efficient translation of the dynamic programming algorithm of the Sequence-Levenshtein distance into Cython

PubMedScrapeR

📚 R Package for scraping PubMed abstracts for most frequently occurring words associated with a keyword

PySpark-Movie-Recommender

🎬 Utilizing PySpark's Alternating Least Squares (ALS) algorithm for model-based movie recommendations.

academic-kickstart

Academic template adapted for Hugo static site generator.

binhouse

A collection of useful little tools & code snippets without a home

clipper

A tool to identify CLIP-seq peaks

cronjob

⌛ A workaround to permanently store file under the global scratch file system mounted on the Hoffman2 Cluster

deconR

A computational method for inferring individual cell type ChIP-seq profiles from population ChIP-seq and single cell RNA-seq data

drlib

Personal R package

dropseq_runner

A collection of scripts to processing single cell sequencing reads to DGE

iGUIDE

Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.

PySpark-Clustering

K-means clustering algorithm in MLlib via PySpark

RISmed

RISmed is an R package for downloading and analyzing data from the NCBI databases

rpkg-skeleton

baseline skeleton framework for a R pkg

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

ShanSabri

shansabri.github.io

My online treefort

slncky

slncky is a tool that filters a set of transcripts for bona-fide long non-coding RNAs and discovers long non-coding RNA orthologs.

sra-tools

SRA Tools

tempus

Tempus Challenge

WhatsAppVisualizeR

💬 R Package for importing and analyzing WhatsApp chat data

yoguRt

This useless package contains one function, yogurt(), with one purpose: To return an interesting yogurt fact. Why? Well, why not?